PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003882
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 242aa    MW: 27314.4 Da    PI: 7.1635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42985326PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24546PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31141198259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYG+K+vk+s++prsYYrC+ ++C+vkk+ver+ +d+ ++++tYeg+Hnhe
  Psi003882 141 EDGYKWRKYGRKVVKSSPHPRSYYRCSDNNCSVKKRVERDPSDQGLLITTYEGTHNHE 198
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32127200IPR003657WRKY domain
SuperFamilySSF1182902.09E-27133200IPR003657WRKY domain
PROSITE profilePS5081130.331135200IPR003657WRKY domain
SMARTSM007744.7E-33140199IPR003657WRKY domain
PfamPF031061.0E-24141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
XLDPFNSLLW YNPMAANALS AFNQEFNIHP QPPVEGQKIE KDVWTQFLVE DKGSDKNDKQ  60
EMKTECMANS PAAQSARSQE DQHSEICNVE EHLSEVSDGN ANKTSVDGDI ADSKIIKKRK  120
IKTEKGPRYA FKTRSETDVL EDGYKWRKYG RKVVKSSPHP RSYYRCSDNN CSVKKRVERD  180
PSDQGLLITT YEGTHNHESP SVIYYIGKPI ILPQQGSKPA IVLVNATLCP EPVLNYAAHQ  240
AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24130201778Probable WRKY transcription factor 4
2lex_A1e-24130201778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB887e-83A0A0D6RB88_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-33WRKY DNA-binding protein 51