PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003988
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27000.5 Da    PI: 7.0625
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41652148PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17007PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.4e-261059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               r  n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss
  Psi003988 10 RRANASARQVTFSKRRRGLFKKAQELSILCEADVALVVFSSTGKLYDYSS 59
               56799*******************************************96 PP
2K-box64.44.2e-228117110100
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + ++ e  +++l+++k++ e   +++R++ G++Le Lslk+LqqLe+qLe +l++iRs+K e+ +++i+elq+k  ++ een++Lr +l+e
  Psi003988  81 QPTTLEFKSKNLKRIKQQFEDTSQNLRKMHGKELEGLSLKDLQQLEEQLEMGLTSIRSQKVEHRIKEIKELQQKGIQMIEENTKLRGQLNE 171
                4566788999****************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.749161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.53E-34269No hitNo description
PRINTSPR004045.1E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-29386IPR002100Transcription factor, MADS-box
PfamPF003196.5E-241357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.06485175IPR002487Transcription factor, K-box
PfamPF014868.3E-1986169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAREKIEIKR RANASARQVT FSKRRRGLFK KAQELSILCE ADVALVVFSS TGKLYDYSSS  60
SMKVILDQYI LYHSTIQNDG QPTTLEFKSK NLKRIKQQFE DTSQNLRKMH GKELEGLSLK  120
DLQQLEEQLE MGLTSIRSQK VEHRIKEIKE LQQKGIQMIE ENTKLRGQLN EGYGSLVENN  180
DGCESLFIEP LENQDPQSSE SINTYAFNFK LHNSPVKDPE DSVTSLQLGL SSHSEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18173173MEF2C
5f28_B1e-18173173MEF2C
5f28_C1e-18173173MEF2C
5f28_D1e-18173173MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1825KRRANASARQVTFSKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.90320.0needle| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073897.11e-61PREDICTED: MADS-box protein SVP
RefseqXP_019073898.11e-61PREDICTED: MADS-box protein SVP
SwissprotQ9FUY68e-59JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA9NM371e-171A9NM37_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t014e-61(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-53MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]