PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004014
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26974.2 Da    PI: 5.6305
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422302PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.41.9e-23959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   r+v f+kRr g+lKKA ELSvLCda v v++fs  gk+ eyss
  Psi004014  9 KKIENAASRNVCFTKRRRGLLKKARELSVLCDASVGVVVFSAAGKMSEYSS 59
               68***********************************************96 PP
2K-box46.61.4e-1683176999
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk...kekelqeenkaLrkkle 99 
                 e++++ s ++e+++L++  e L++e R++ G++L+  +++eL +L++++e +lk++Rs+++ell eq+ e q       e+ e n++Lr++++
  Psi004014  83 HEANDHMSDTTEVTQLQQCHELLEHEYRRMSGKELGGTNMRELLELQEHIELGLKRVRSRQYELLNEQMAEVQTilgAGLEVVEVNNRLRQQVK 176
                678889999***************************************************************9822234577888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.446161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-28289IPR002100Transcription factor, MADS-box
CDDcd002657.04E-35273No hitNo description
PRINTSPR004045.0E-23323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-233859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1285175IPR002487Transcription factor, K-box
PROSITE profilePS5129710.30688181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKREMKK IENAASRNVC FTKRRRGLLK KARELSVLCD ASVGVVVFSA AGKMSEYSST  60
SNMNIIIERY MKNRRHDKRV TPHEANDHMS DTTEVTQLQQ CHELLEHEYR RMSGKELGGT  120
NMRELLELQE HIELGLKRVR SRQYELLNEQ MAEVQTILGA GLEVVEVNNR LRQQVKALLG  180
HEESASEPES RLETMAHQYC SNADFSGENE EEEDADCDEN YDTSLHLGPY DPNSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-14179179MEF2C
5f28_B7e-14179179MEF2C
5f28_C7e-14179179MEF2C
5f28_D7e-14179179MEF2C
6byy_A7e-14170169MEF2 CHIMERA
6byy_B7e-14170169MEF2 CHIMERA
6byy_C7e-14170169MEF2 CHIMERA
6byy_D7e-14170169MEF2 CHIMERA
6bz1_A8e-14170169MEF2 CHIMERA
6bz1_B8e-14170169MEF2 CHIMERA
6bz1_C8e-14170169MEF2 CHIMERA
6bz1_D8e-14170169MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8171e-173D5A817_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.13e-28MIKC_MADS family protein