PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004129
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 228aa    MW: 24921.6 Da    PI: 9.9814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38836998PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-28898PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.7e-103171340
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40
                      W+ eE +ll ++v+++++g   +W+ Ia+++g+gRt +++
        Psi004129 31 HWSREEIDLLRKGVQKYPKGtsqRWEVIANYIGTGRTVEEI 71
                     6************************************9886 PP
2Myb_DNA-binding23.81.1e-07171215345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W++  +  l++a k ++++   +W+++a  ++ g++  qc  ++ 
        Psi004129 171 AWSAVQERALIQALKTFPKEtpqRWERVATAVP-GKSKVQCMRKFT 215
                      8********************************.*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.7372782IPR017884SANT domain
SMARTSM007171.3E-72881IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-63072IPR009057Homeodomain-like
PfamPF002492.1E-83071IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-93073IPR009057Homeodomain-like
CDDcd001671.86E-73271No hitNo description
PROSITE profilePS512939.109167222IPR017884SANT domain
SMARTSM007172.7E-9168220IPR001005SANT/Myb domain
SuperFamilySSF466896.28E-10170218IPR009057Homeodomain-like
CDDcd001671.27E-7171218No hitNo description
Gene3DG3DSA:1.10.10.608.3E-5171217IPR009057Homeodomain-like
PfamPF002497.5E-7171215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
XTVQGHTVSQ GLQGHAKAEG LLNSYENKEK HWSREEIDLL RKGVQKYPKG TSQRWEVIAN  60
YIGTGRTVEE ILKAIKTVLL QKPDTANSFD SFLERRKNAN PITSPLTTRD EVGDSPTNGC  120
VADTIVGEKA KGVTEQQASG GSNRSADGKG LSGGSIQSVA NGSVAGNDQD AWSAVQERAL  180
IQALKTFPKE TPQRWERVAT AVPGKSKVQC MRKFTEMKEN FRNKKSSD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.58370.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518050.12e-82dnaJ homolog subfamily C member 2
TrEMBLA0A0C9S8761e-110A0A0C9S876_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5475_2529 transcribed RNA sequence
STRINGERM981755e-82(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.25e-70DnaJ domain ;Myb-like DNA-binding domain