PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004183
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 225aa    MW: 24842.6 Da    PI: 4.1848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42994481PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-5719PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141154146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++teE+  ++ + ++l ++ W+ Ia++++ gRt+ ++k++w++
        Psi004183 11 RGNFSTEEENAIISLQARLNNR-WAQIAKHLP-GRTDTEIKNYWHS 54
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.6E-15160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-24159IPR009057Homeodomain-like
PROSITE profilePS5129423.259660IPR017930Myb domain
SMARTSM007171.4E-131058IPR001005SANT/Myb domain
PfamPF002495.2E-131155IPR001005SANT/Myb domain
CDDcd001677.50E-111353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
WMNYLRPGIK RGNFSTEEEN AIISLQARLN NRWAQIAKHL PGRTDTEIKN YWHSCLKKKA  60
VAAGAANQGV CEAPTMILDP IDIDVVDMDP APEIDLYGDS GAGCSRFEVI LSPSITPEVT  120
DWGNFEPNCD QFSANGSSVY KETLNDDDRY GDASLDFPLV GDRNSCCSTT VGNQNWQPVD  180
SNCVSFSPSS CSLLNQKNPD ETLFEQIQAA LIMLSEDFGS ELRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1316046105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1316046105C-Myb DNA-Binding Domain
1msf_C2e-1316046105C-Myb DNA-Binding Domain
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-25myb domain protein 67