PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi004343

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 218aa MW: 23593.5 Da PI: 6.6161

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S42991265	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-26930	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.6	1.4e-45	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp e+p+kfanvhk+FGasnv+k+l++l++++reda++sl+yeAear++dPvyG+vg i+ lq+q++ql++ela++++ Psi004343 9 PCAACKFLRRKCTSECVFAPYFPPEEPQKFANVHKIFGASNVTKILNDLEPHQREDAVNSLAYEAEARLKDPVYGCVGAISILQRQVQQLQKELAAAHAD 108 7**********************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.928	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-44	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MASTSSNSPC AACKFLRRKC TSECVFAPYF PPEEPQKFAN VHKIFGASNV TKILNDLEPH 60 QREDAVNSLA YEAEARLKDP VYGCVGAISI LQRQVQQLQK ELAAAHADLL QYTSAAEPVL 120 NPHSPGSTLP TYSRFQMIHS AATEQQQQNL VEFPNSRELQ LTREQLLELA LRIGGSYEAG 180 LAALGMANHA YALYPSPRPA SDGGSGSSGC SFGHLSSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-62	3	112	5	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-62	3	112	5	114	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403438.1	1e-68	LOB domain-containing protein 6-like
Swissprot	Q8L8Q3	3e-63	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	H9X0F3	4e-81	H9X0F3_PINTA; Uncharacterized protein (Fragment)
STRING	PP1S170_78V6.1	4e-68	(Physcomitrella patens)
STRING	PP1S170_93V6.1	9e-68	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-65	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]