PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004389
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25278.9 Da    PI: 9.0492
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421612PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.2e-21942134
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
               krien+s rqvtf+kRrng++KKA+ELSvLCdae
  Psi004389  9 KRIENTSSRQVTFCKRRNGLMKKAYELSVLCDAE 42
               79******************************98 PP
2K-box82.41e-2778169798
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                k  +e+++++++ e+++++++i+ L+++qR++lGe+Les+s+ke++qLe+q  ++l++iR++K++ll+++ie l++k+++l een  L+kk 
  Psi004389  78 KTIKEQDNQYMKLEITNMEEKIKILESSQRKMLGEGLESCSVKEMNQLESQAVQGLRHIRARKTKLLVDEIELLKRKKQNLFEENAFLHKKC 169
                338999***********************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.38161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-21178IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-24151IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-181043IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-193859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-2481169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.91285175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVRGKTQMKR IENTSSRQVT FCKRRNGLMK KAYELSVLCD AEXGTYDFLS TREALRIRQS  60
QKMLERYQKY SQECGINKTI KEQDNQYMKL EITNMEEKIK ILESSQRKML GEGLESCSVK  120
EMNQLESQAV QGLRHIRARK TKLLVDEIEL LKRKKQNLFE ENAFLHKKCV DSTCLDDWVF  180
TTPTIGLESK KHNDVETQLV ISPPNVCDHL FVNNFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829116.13e-58MADS-box protein SOC1 isoform X2
TrEMBLD5A9W41e-109D5A9W4_PICSI; Uncharacterized protein
STRINGERM965321e-57(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-46AGAMOUS-like 19