PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004430
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 214aa    MW: 24467 Da    PI: 9.2972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42988759PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20188PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-122264754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+ +L
  Psi004430 22 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVDKL 64
               57*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-121369No hitNo description
PROSITE profilePS5088816.3041564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-171884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-162170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-172179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-102264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MELADERSIL RYKKPKLSKN VVSERRRRQK MNKLLYTLRA LVPNISKMDK ASILGDAIEY  60
VDKLKKQVER AESDVQSTNV SAQSADPRIE ETDSFTVRLD AANRYGSDRK YHVQVEAHVV  120
EESIVEVRIR CKQEHGILFH LTRALESLPF RLKNVTFSTL NEYLLLLNAV LQADHCFPAM  180
SDYGVRQSIE DSFGKQGLIL TSGNSSGPLW QELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-152074963Transcription factor MYC2
5gnj_B1e-152074963Transcription factor MYC2
5gnj_E1e-152074963Transcription factor MYC2
5gnj_F1e-152074963Transcription factor MYC2
5gnj_G1e-152074963Transcription factor MYC2
5gnj_I1e-152074963Transcription factor MYC2
5gnj_M1e-152074963Transcription factor MYC2
5gnj_N1e-152074963Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166DKLKKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.13e-20bHLH family protein