PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004499
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 211aa    MW: 23651.2 Da    PI: 8.067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422206PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-11202PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-174897255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr++  +g+WvAeIr        +  r++lg++ tae+Aa+a++aa  +l+g
  Psi004499 48 RFRGVRRRT-WGKWVAEIRMlR-----CrSRVWLGSYRTAEQAARAYDAASFCLRG 97
               69****877.**********76.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-124897IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2848107IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2048106IPR016177DNA-binding domain
PROSITE profilePS5103221.95748105IPR001471AP2/ERF domain
SMARTSM003802.5E-3348111IPR001471AP2/ERF domain
PRINTSPR003678.0E-104960IPR001471AP2/ERF domain
CDDcd000187.40E-2256107No hitNo description
PRINTSPR003678.0E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
XGDHRNIRSL SQYLYSCSGY LAMKKEVDQA IMVSRSREAE AEELRSRRFR GVRRRTWGKW  60
VAEIRMLRCR SRVWLGSYRT AEQAARAYDA ASFCLRGPAA FLNFPESPPA EFLPYPLRPL  120
HDIHLSPQQI RTIAANYATM TPSSTSISTS TLGLPPQQSN LMDNSALEEA GGEGSASVTT  180
HVDSTKSAPR NMIFPNLNDT LDEDSEDSSE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18481051472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.124900.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8A71e-137D5A8A7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-23ERF family protein