PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004510
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24231.9 Da    PI: 8.7409
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646793PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-18823PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.6e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i++ + rqvtfskR++gi+KKA+ELSvLCdaevav+ifs+tg+lye++s
  Psi004510  9 KKIDDVTSRQVTFSKRKAGIFKKAHELSVLCDAEVAVLIFSNTGRLYEFAS 59
               689**********************************************86 PP
2K-box61.33.8e-21861731198
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++ +  q+ ++ L+++++ Lqr qR+++Ge+L  L++ eL+ Le+ +e ++ k+R+++n++ le+i +l+ ke+ l  en++L+k+l
  Psi004510  86 VENKNPIQEGIEILRQKLRALQRLQRNMMGEELALLKVGELHDLEHTIECAILKVRARQNQIQLEKIANLRFKEQLLIGENEQLQKML 173
                45556789999**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-31275IPR002100Transcription factor, MADS-box
CDDcd002655.02E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1788173IPR002487Transcription factor, K-box
PROSITE profilePS5129712.48989180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKK IDDVTSRQVT FSKRKAGIFK KAHELSVLCD AEVAVLIFSN TGRLYEFASS  60
RCMERTIERY EKCTKAINCP SSEHNVENKN PIQEGIEILR QKLRALQRLQ RNMMGEELAL  120
LKVGELHDLE HTIECAILKV RARQNQIQLE KIANLRFKEQ LLIGENEQLQ KMLLEEAQRS  180
LGLRPTSLIQ TDIITSPTVI MNPYEGFFXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19170169Myocyte-specific enhancer factor 2B
1tqe_Q3e-19170169Myocyte-specific enhancer factor 2B
1tqe_R3e-19170169Myocyte-specific enhancer factor 2B
1tqe_S3e-19170169Myocyte-specific enhancer factor 2B
6c9l_A3e-19170169Myocyte-specific enhancer factor 2B
6c9l_B3e-19170169Myocyte-specific enhancer factor 2B
6c9l_C3e-19170169Myocyte-specific enhancer factor 2B
6c9l_D3e-19170169Myocyte-specific enhancer factor 2B
6c9l_E3e-19170169Myocyte-specific enhancer factor 2B
6c9l_F3e-19170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373424.13e-49MADS-box protein GGM13-like isoform X1
RefseqXP_024373432.13e-49MADS-box protein GGM13-like isoform X2
TrEMBLS5MKE41e-149S5MKE4_PICAB; DAL21 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.23e-43MIKC_MADS family protein