PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004559
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LFY
Protein Properties Length: 208aa    MW: 23761.2 Da    PI: 6.0469
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646638PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-10115PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY167.41.3e-51311931152
    FLO_LFY   1 mdpeafsaslfkwdpraaa..aapparlleeaavseapleaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseif 97 
                md+e+f++ +f+wd+r+a   aap+a+ +  ++ + +ple    ++ rk l++le+lf++yGvry+t+ak++e+Gft++tLv+m++ee++dlmk+l+ei+
  Psi004559  31 MDAEHFPVGFFRWDQRPAPaaAAPAATTTVFNKDHGRPLEIILPMNGRKeLKSLEDLFREYGVRYSTLAKMTEMGFTANTLVNMTEEEIEDLMKTLVEIY 130
                9*************777662233333333333445677888999998888************************************************** PP

    FLO_LFY  98 rldllvGeryGikaavraerrrlee..........eeaekkrrkllsedeetaldalsqeglsee 152
                ++dll+GeryGik+a+rae++rl++          +e  ++r+++l++d++t   a+++eg +  
  Psi004559 131 HMDLLIGERYGIKSAIRAEKKRLQDclemqrleilSE--AERKRILHDDQNTFAAAMTSEGYKSS 193
                *****************************99987544..555557999999999******96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.1E-3831174IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
PLNAKSLDGR EIPGPRGVLE ERTAFYLEKN MDAEHFPVGF FRWDQRPAPA AAAPAATTTV  60
FNKDHGRPLE IILPMNGRKE LKSLEDLFRE YGVRYSTLAK MTEMGFTANT LVNMTEEEIE  120
DLMKTLVEIY HMDLLIGERY GIKSAIRAEK KRLQDCLEMQ RLEILSEAER KRILHDDQNT  180
FAAAMTSEGY KSSVSSCQAQ WCCLHKQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A2e-3877172498GINLFY PROTEIN
4ude_B2e-3877172498GINLFY PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.141350.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966714.22e-29floricaula/leafy-like protein FL1
SwissprotO044075e-93NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLA9P2C11e-133A9P2C1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-19floral meristem identity control protein LEAFY (LFY)