PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004591
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 206aa    MW: 22652.5 Da    PI: 9.2473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37602959PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-28034PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19101153156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                s+y+GVr+++ +g+++AeIrdp +  k +r++lg+f taeeAa a+++a+ +++g+
  Psi004591 101 SHYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFNTAEEAAHAYDRAAFRIRGA 153
                79********.**********954..34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14101152IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-23101161IPR016177DNA-binding domain
CDDcd000184.15E-31101160No hitNo description
Gene3DG3DSA:3.30.730.105.8E-32102160IPR001471AP2/ERF domain
PROSITE profilePS5103224.829102160IPR001471AP2/ERF domain
SMARTSM003804.8E-36102166IPR001471AP2/ERF domain
PRINTSPR003675.1E-11103114IPR001471AP2/ERF domain
PRINTSPR003675.1E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDVAGGVSNN INMKMLNMLE LIRHHLLDVE DEIDIIDLQR GNQVLASGSR LTSHGNKFAE  60
AQDYSSSSSV CTVIRREEAF NVKPQAHDED NGENKQISRA SHYRGVRRRP WGKFAAEIRD  120
PAKKGARVWL GTFNTAEEAA HAYDRAAFRI RGARALVNFP LAFASNSENG SAVSHMGQKR  180
KRGNGGGGTL DLGACGWIME KLICLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3298161164ATERF1
3gcc_A2e-3298161164ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA31e-148A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-26ethylene responsive element binding factor 2