PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004602
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 206aa    MW: 22959.9 Da    PI: 4.236
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071660PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-8791PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-054570123
               EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
               + Cp   C+k++ + + L+ H+r+ H
  Psi004602 45 FACPydGCDKCYIHEYKLNLHLRReH 70
               78**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.41E-54168No hitNo description
Gene3DG3DSA:3.30.160.608.4E-84267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.0994572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804770IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
XPHIKSTHEK NLANAVKLPP QNEREFLHPK VPTSVYGSVP SDRPFACPYD GCDKCYIHEY  60
KLNLHLRREH AGYAFEENGR HGSDSEDEMD QGSDQDGNGR NAGIMTGSGR GRLRVTSKTS  120
SATNLHRKFM NAAAVDSNTK TSSRAIVESK EPGKGHPRED SEETEDQEDT DNEGWGHGTE  180
TDDDDEDDND DDDDDADEEE TEDDMD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629428.11e-37uncharacterized zinc finger protein At4g06634 isoform X4
TrEMBLB8LR039e-76B8LR03_PICSI; Uncharacterized protein
STRINGERM978431e-37(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-22C2H2 family protein