PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi004623

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

SBP

Protein Properties

Length: 205aa MW: 23245 Da PI: 9.1395

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41650255	PU_ref	Unigene	View CDS
gnl\|UG\|Psi#S42992673	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-2131481	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.4e-42	82	158	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adl++akey+rrh+vCe+hska vvlv gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+ Psi004623 82 ACQVEKCAADLADAKEYYRRHRVCEQHSKARVVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTP 158 5*************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-35	75	144	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.009	80	157	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.24E-39	81	160	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.4E-32	83	156	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
XAPPSPSMKN PELPVEMDEV EVKVDIQSTN ASADEPRTAK RQGFELARIP EDPASKPTAL 60 SSPKKPKAAS SSSSSPRAQP PACQVEKCAA DLADAKEYYR RHRVCEQHSK ARVVLVLGLQ 120 QRFCQQCSRF HVLEEFDEAK RSCRRRLAGH NERRRKTPSD SSVDRLDSNH HLNDNWLRHM 180 TESDKMTMVL ERNTTAKVCK EIKNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-35	69	156	1	84	squamosa promoter binding protein-like 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.6262	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398957.2	3e-43	PREDICTED: squamosa promoter-binding protein 1-like
Swissprot	Q38741	1e-39	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A9NSA8	1e-144	A9NSA8_PICSI; Uncharacterized protein
STRING	GSMUA_Achr4P23650_001	1e-42	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-39	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]