PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004627
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 204aa    MW: 22557.4 Da    PI: 10.2523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37605525PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20453PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-181260355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ykG+r+++ rg+W+AeIrdp++      ++lg+f+tae+Aa+a++a ++k++g
  Psi004627 12 YKGIRQRP-RGKWAAEIRDPRK---GVMVWLGTFDTAEKAARAYDAEARKIRG 60
               9*******.8*********943...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6011168IPR001471AP2/ERF domain
SMARTSM003806.3E-341174IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-201169IPR016177DNA-binding domain
CDDcd000184.82E-301170No hitNo description
Gene3DG3DSA:3.30.730.105.4E-291169IPR001471AP2/ERF domain
PfamPF008477.9E-111260IPR001471AP2/ERF domain
PRINTSPR003679.6E-91223IPR001471AP2/ERF domain
PRINTSPR003679.6E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
XTARGRKRKN IYKGIRQRPR GKWAAEIRDP RKGVMVWLGT FDTAEKAARA YDAEARKIRG  60
KKAKVNFADD LPPPKKNKVV KKPEDKMTEG SPIKTCTHLP QCSARSDIVQ GQKSNRLATA  120
KSALSTTIEG DGADFMDVPT LLIMGISEGS HQDGNSLLDC KAIKPNQSNS SEESVMDSYI  180
GLLRFLYLED RTDQSTGRVD INGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1712671571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI0B4A04e-33I0B4A0_DIOKA; Ethylene response factor 3 (Fragment)
STRINGGSMUA_Achr9P18090_0012e-33(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-23ethylene-responsive element binding protein