PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004697
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 22776.3 Da    PI: 9.9644
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41651960PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6934PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-29454151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s
  Psi004697  4 KRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKISEFAS 54
               79***********************************************86 PP
2K-box58.43e-20811681299
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++ +  +  l+ L ++++ L+++ ++++GedLesL++keLq+Le+qL++++k+i ++K++++ ++ + l +k + l+ee+ +L++kl 
  Psi004697  81 QNIKFGELRLKTLHEKMDVLKKKEKNMVGEDLESLTMKELQRLEKQLQTGIKRISDRKMRIFAQSSKLLIQKVRILEEEKIELQTKLS 168
                555666677899************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.922156IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-28175IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-30155IPR002100Transcription factor, MADS-box
PfamPF003194.3E-25552IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-171833IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-173354IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.95583173IPR002487Transcription factor, K-box
PfamPF014865.2E-1690167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEMKRIQNPS RRQVTFSKRK NGLLKKAFEL SVLCDAEVAL IIFSETGKIS EFASHDDVAT  60
ILEKYRIYTE TNGNLGSTSL QNIKFGELRL KTLHEKMDVL KKKEKNMVGE DLESLTMKEL  120
QRLEKQLQTG IKRISDRKMR IFAQSSKLLI QKVRILEEEK IELQTKLSAR GDSSTSATNL  180
DLGLSYSTMA SGPCDGNRNG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17172676MEF2C
5f28_B1e-17172676MEF2C
5f28_C1e-17172676MEF2C
5f28_D1e-17172676MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.70520.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMI61e-143A9NMI6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-37AGAMOUS-like 8