PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004806
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 195aa    MW: 20260.6 Da    PI: 4.6236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38776315PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-11234PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77e-125780427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
               + C+f+ar G+CkyG++CkF H++
  Psi004806 57 PTCSFYARQGFCKYGPTCKFDHPM 80
               78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1835381IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-65380IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-95780IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65783IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-55978IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
XHEASPQPYA GGITTWPIPR TPLMANTYLQ GPSAYVPLMI SQGMMPVPGW NPFPGAPTCS  60
FYARQGFCKY GPTCKFDHPM GTLSYSPSAS SLADMPVAPY PVGSSPATLA PSFSSTELRA  120
ETAAGPFKES IATPETPLSS SAGEALDLGA QGPVISTSTG LSFSESEENP LVKKSNQVSV  180
LANGIAKEGD IPISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024994159.13e-34zinc finger CCCH domain-containing protein 34 isoform X2
TrEMBLA0A2G5F0S95e-28A0A2G5F0S9_AQUCA; Uncharacterized protein
TrEMBLA0A438F5W03e-28A0A438F5W0_VITVI; Zinc finger CCCH domain-containing protein 32
STRINGAquca_003_00828.15e-28(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-20C3H family protein