PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004829
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22207.2 Da    PI: 9.1757
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646810PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-19904PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.45.8e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n + r+ tf kR+ g+lKKA+ELSvLCdaeva+iifs+tgk+ye++s
  Psi004829  9 KRIQNPISRHATFYKRKGGLLKKAFELSVLCDAEVALIIFSETGKIYEFAS 59
               79***********************************************86 PP
2K-box50.96.7e-18811522799
      K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                + ++Lq++  +++GedLesL++keL qLe+qL ks ++i ++K++++ ++ + l ++ ++l+een++L++k++
  Psi004829  81 RPSSLQNT-ENIVGEDLESLTMKELDQLEKQLRKSTRRICDRKMKIFSQSSKLLEQQVRSLEEENTELHTKFN 152
                55789988.9************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.114161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28280IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.84463157IPR002487Transcription factor, K-box
PfamPF014861.3E-1485151IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGKKKVELKR IQNPISRHAT FYKRKGGLLK KAFELSVLCD AEVALIIFSE TGKIYEFASH  60
NDPTTILAKY GRQMETTRNA RPSSLQNTEN IVGEDLESLT MKELDQLEKQ LRKSTRRICD  120
RKMKIFSQSS KLLEQQVRSL EEENTELHTK FNTTGDSSTS APDLFIRASV PKTQLHLGRC  180
DENRDDHSFA SELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19170169MEF2C
5f28_B2e-19170169MEF2C
5f28_C2e-19170169MEF2C
5f28_D2e-19170169MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894512.18e-42truncated transcription factor CAULIFLOWER A-like
RefseqXP_023894513.18e-42truncated transcription factor CAULIFLOWER A-like
TrEMBLA9P1V31e-141A9P1V3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.19e-36AGAMOUS-like 6