PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004867
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 193aa    MW: 22317.5 Da    PI: 10.0716
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823208PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-968PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.1e-221691787
   trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               m+ ++r+++lk+plWe+vs++++e g++r pk+Ckek+en++k+yk+ keg+ +r  ++ +++++f+qlea
  Psi004867  1 MDANFRDASLKGPLWEHVSRRLEELGYHRDPKKCKEKFENIHKYYKRSKEGRVGR--QDGKNYRFFSQLEA 69
               68899************************************************97..66678*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.83E-17149No hitNo description
PfamPF138372.5E-15270No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDANFRDASL KGPLWEHVSR RLEELGYHRD PKKCKEKFEN IHKYYKRSKE GRVGRQDGKN  60
YRFFSQLEAL YSNNNSKPPY NSNKTMNDAS TISNGGGRVQ AHEDPMSTRQ DEDNNNLGGN  120
FMVGTTSAGN TDLNSSEGIS FSSDSSEDYD EPRDSNNKKR KRRGTKKLMA FFESLMKQMM  180
EKQEKMQQKK KKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160PRDSNNKKRK
2157162KKRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.137850.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250890.15e-45PREDICTED: trihelix transcription factor GTL1 isoform X2
TrEMBLA0A0D6QXM99e-46A0A0D6QXM9_ARACU; Uncharacterized protein
STRINGXP_010250883.15e-44(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-32GT-2-like 1