PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004976
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 186aa    MW: 20377.4 Da    PI: 4.7045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38860409PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14624PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16247756
        AP2  7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               r+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  Psi004976  2 RQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDTAAYQLRGE 47
               5566.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.481154IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-20255IPR016177DNA-binding domain
PfamPF008471.1E-9247IPR001471AP2/ERF domain
SMARTSM003801.2E-27260IPR001471AP2/ERF domain
CDDcd000181.53E-29256No hitNo description
Gene3DG3DSA:3.30.730.106.3E-28255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
XRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAAFAYDTA AYQLRGEYAR LNFPDLRYLL  60
LSNSDNGSPN VLSSPGNALS VLKSSVDAKL QAICQRLSQE NSSENRLMAQ TANNEALENV  120
KCEVSGSSNS STICGAESAS TSPSKCEVDS SALQKAPSFS IFAELDDCLT KMPSLDPEVI  180
QDVMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162541063ATERF1
3gcc_A2e-162541063ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.85890.0shoot
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.15e-45PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ9LM158e-39RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLH9MAQ43e-84H9MAQ4_PINLA; Uncharacterized protein (Fragment)
STRINGERM942001e-42(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-28ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]