PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004977
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21565.5 Da    PI: 8.7692
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648519PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-10016PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-183791256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Psi004977 37 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 91
               778899***********************************************98 PP
2HD-ZIP_I/II127.65.1e-4137127192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
    Psi004977  37 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 127
                  69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.0543393IPR001356Homeobox domain
SMARTSM003892.8E-153597IPR001356Homeobox domain
SuperFamilySSF466892.99E-1836101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-173791IPR009057Homeodomain-like
CDDcd000862.33E-133794No hitNo description
PfamPF000468.5E-163791IPR001356Homeobox domain
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
SMARTSM003405.3E-2293136IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-1293127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAVKRERERA FDLEAERDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL EESFREHSTL  60
NPKQKNALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE VLKRCCENLT EENRRLQKEL  120
QELRALKAAP QPCVIGQDNY YMPLPATTLT MCPSCERVAT MENSHSRSLQ FSKSQISQFA  180
QQSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541TRKKLRL
28593RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.171490.0needle
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388907.12e-90homeobox-leucine zipper protein HAT4-like
SwissprotP466657e-69HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA9NX561e-130A9NX56_PICSI; Uncharacterized protein
STRINGPP1S31_269V6.17e-90(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-71homeobox from Arabidopsis thaliana