PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005026
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 184aa    MW: 20438.9 Da    PI: 10.517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55421775PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-21737PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-202171155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r++lg+f+tae+Aa+a++ a+++l+g
  Psi005026 21 THFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDTAEDAARAYDDAARALRG 71
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-132171IPR001471AP2/ERF domain
CDDcd000181.55E-162179No hitNo description
Gene3DG3DSA:3.30.730.103.1E-312279IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222280IPR016177DNA-binding domain
PROSITE profilePS5103222.6692279IPR001471AP2/ERF domain
SMARTSM003801.4E-342285IPR001471AP2/ERF domain
PRINTSPR003678.1E-112334IPR001471AP2/ERF domain
PRINTSPR003678.1E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRRARVGIGG CESESRAVKE THFRGVRKRP WGRFAAEIRD PWKKARVWLG TFDTAEDAAR  60
AYDDAARALR GPKAKTNFAL AADNTASAAL ARTTNARWTR TLHPQKQWPH DLKASSVPAL  120
ESSKRHKVFL GSDCRPEFES RNNSPCAALS EQKTSSSLRK TPLLLDLNLP PSIDEDNDNE  180
SAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211980264ATERF1
3gcc_A1e-211980264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.80510.0needle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.12e-36PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9LW498e-33ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLD5A9F41e-131D5A9F4_PICSI; Uncharacterized protein
STRINGXP_010278126.18e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-23ethylene responsive element binding factor 3