PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi005123

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 179aa MW: 19617.2 Da PI: 8.8219

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41646616	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-27351	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.9e-42	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r+d+++slvyeA+ar+rdPvyG++gvi++lq+q+++l++el+++++e Psi005123 13 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRSDTANSLVYEANARLRDPVYGSMGVISTLQHQIQSLQSELNVVRAE 112 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.917	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MVGGQKPLNT STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFASVHKIFG ASNVSKMLME 60 VPESQRSDTA NSLVYEANAR LRDPVYGSMG VISTLQHQIQ SLQSELNVVR AELVRYRCNQ 120 DQNAVTATPS MVNLRGYPPV SSSICSQTAS ESVDFAAVSP STTLTNMSDN KGTIRPWKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	9	129	7	127	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	9	129	7	127	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821727.1	2e-70	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-63	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A9P2E3	1e-131	A9P2E3_PICSI; Uncharacterized protein
STRING	Gorai.009G295000.1	4e-68	(Gossypium raimondii)
STRING	EOY20040	3e-68	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-65	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]