PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005620
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bZIP
Protein Properties Length: 149aa    MW: 16971.8 Da    PI: 7.514
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S49944312PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6710PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.86.5e-25567163
               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
               e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++kv++L+ eN+aL++el+++ +e++kl++e+
  Psi005620  5 ERELKRQRRKQSNRESARRSRLRKQAECEELATKVDTLTVENMALRSELNRMAEECKKLTAEN 67
               89**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-17364No hitNo description
SMARTSM003381.5E-22569IPR004827Basic-leucine zipper domain
PfamPF001704.0E-22567IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553770IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-12864No hitNo description
CDDcd147021.07E-161060No hitNo description
PROSITE patternPS0003601227IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDPDERELKR QRRKQSNRES ARRSRLRKQA ECEELATKVD TLTVENMALR SELNRMAEEC  60
KKLTAENASI MERLKKLHGE DMTTITEENG STKISLQSVK PEGNGHFHDI SRGINSNSTE  120
RNEQRQSETC DSNGKVHTLL DANARSDTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127RRSRLRK
22128RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.147650.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627689.16e-38light-inducible protein CPRF3 isoform X2
RefseqXP_020530216.16e-38light-inducible protein CPRF3 isoform X2
RefseqXP_020530218.16e-38G-box-binding factor 1 isoform X3
TrEMBLA0A0C9QT242e-82A0A0C9QT24_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10978_2763 transcribed RNA sequence
TrEMBLA0A0D6QU582e-82A0A0D6QU58_ARACU; Uncharacterized protein
STRINGERN175243e-37(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.22e-29G-box binding factor 3