PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005633
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YB
Protein Properties Length: 148aa    MW: 16646.7 Da    PI: 4.3906
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55410105PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-19508PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.22e-23896391
      NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
               ++d  lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e++ +  +++r
  Psi005633  8 KDDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYAAYEQHR 96
               67889**************************************************************************9977666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-395139IPR009072Histone-fold
SuperFamilySSF471132.9E-359137IPR009072Histone-fold
PfamPF008085.9E-201276IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDIVGKSKDD VSLPKATMFK IIKEMLPPDV RVARDAQDLL VECCVEFINL ISSESNEVCG  60
REEKRTIAPE HVLRALEVLG FGDYIEEVYA AYEQHRLETL DSPKSGRWAS GAEMTEEEAL  120
AEQQRMFAEA RARMNNGNAN PPRQSDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-37913112133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.85880.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.13e-98protein Dr1 homolog
RefseqXP_011622414.13e-98protein Dr1 homolog
RefseqXP_020521360.13e-98protein Dr1 homolog
SwissprotP495925e-81NC2B_ARATH; Protein Dr1 homolog
TrEMBLB8LMI41e-105B8LMI4_PICSI; Uncharacterized protein
STRINGERN035791e-97(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-85nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]