PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi005947
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 119aa    MW: 13578.2 Da    PI: 4.4492
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37605726PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-22008PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10851344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++eE +++ +a + + ++   +W+ +a+++g g+ + ++k ++
        Psi005947  8 EWSAEENKIFENALAIYDKDtpdRWHNVASMVG-GKNPDEVKRHY 51
                     6********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.659459IPR017884SANT domain
SMARTSM007172.8E-9557IPR001005SANT/Myb domain
PfamPF002491.6E-7851IPR001005SANT/Myb domain
CDDcd001673.08E-8855No hitNo description
SuperFamilySSF466891.57E-12862IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-5855IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MCSRSLVEWS AEENKIFENA LAIYDKDTPD RWHNVASMVG GKNPDEVKRH YEILLEDLNC  60
IEAGKVPIPN YTFDITTKDE VPVHYKDGGE DGQVTVSGSN DTVVWTNEEQ RLLMHLKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-299711173RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970206.18e-32PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC13e-32D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010254802.12e-30(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-31RAD-like 6