PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006055
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 107aa    MW: 11718.9 Da    PI: 6.791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420321PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082063344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +l+ +a + + ++   +W+ +a+ +g g++++++k ++
        Psi006055 20 NWTFKQNKLFENALAIYDKDtpdRWHNVASVVG-GKSPEEVKRHY 63
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.4921671IPR017884SANT domain
SMARTSM007172.6E-81769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-51973IPR009057Homeodomain-like
CDDcd001674.46E-82067No hitNo description
PfamPF002494.6E-62063IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-122074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MACQSASSSG KHSSNSTATN WTFKQNKLFE NALAIYDKDT PDRWHNVASV VGGKSPEEVK  60
RHYEILLEDL NSIEAGQVPF PNYISSRPNN REILGGGKPI LGNSDNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-301386376RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106182.11e-36PREDICTED: protein RADIALIS-like 6
RefseqXP_013590823.11e-36PREDICTED: protein RADIALIS-like 6
RefseqXP_013652446.11e-36protein RADIALIS-like 6
RefseqXP_013700871.11e-36protein RADIALIS-like 6
SwissprotQ1A1734e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC14e-74D5ADC1_PICSI; Uncharacterized protein
STRINGBra015856.1-P6e-36(Brassica rapa)
STRINGBo6g119390.18e-36(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-36RAD-like 6