PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006150
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family S1Fa-like
Protein Properties Length: 90aa    MW: 9908.77 Da    PI: 10.4776
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649882PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14939PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA125.81.4e-392690670
       S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
               +  +G+nPGlivllvv g+llvf+vgny+ly+yaqk+lPP+kkkPvskkk+kreklkqG+++PGe
  Psi006150 26 AAGRGFNPGLIVLLVVVGVLLVFIVGNYVLYMYAQKTLPPKKKKPVSKKKMKREKLKQGISAPGE 90
               4569************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.7E-382790IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MEEDFSSQAD IDPSAFASQE RLLTKAAGRG FNPGLIVLLV VVGVLLVFIV GNYVLYMYAQ  60
KTLPPKKKKP VSKKKMKREK LKQGISAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-26DNA-binding protein S1FA
RefseqXP_024026346.11e-26DNA-binding protein S1FA
SwissprotP425538e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA9NTB92e-57A9NTB9_PICSI; Uncharacterized protein
STRINGXP_010104121.13e-25(Morus notabilis)