PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006246

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 812aa MW: 90029.2 Da PI: 5.1897

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50073214	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.4e-53	6	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk k+++ + evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d++++s + Psi006246 6 LPPGFRFHPTDEELISCYLKGKLNHGLkAAELEVISEVDLYKLEPWDLPeKsFLPSTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKIYS-RA 104 79******************987763555689**********95344556788**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +++g+kktLvfy+grap+ge+tdWvmheyrle Psi006246 105 STIGIKKTLVFYRGRAPQGERTDWVMHEYRLE 136 99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-61	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.043	6	158	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI SEVDLYKLEP WDLPEKSFLP 60 STDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KTLVFYRGRA 120 PQGERTDWVM HEYRLEENES EAGPCLQNAF VLCRVFKKSG LGEKSGEQYT TQVEKGDLSL 180 IKKNLSPGYF GDIEVHSEEQ SKPVEGIDAN SHLPSKISSK ILNDTTGDSA PLNKWLDILL 240 DDTNSNSSCV ALDEDTIHTQ VDAMPDTPRM QCDSACLPFD ESEFPQIPVN ISFSQYGVPN 300 VCLDAYFEEE RMLDEMLSAA SQDYTNSKAY HSFLGDTLAD ILNGGYIKVK HLLPSMEELE 360 NHDSCLWEVP NPSLHHDGTG IQICSRSPVL QSHKRGILSE GTAARRVRMQ LHKMEDSVER 420 NEKDVNVRHS QNMSNDWYDS KSDSTSCPEM QQLHFGQFDG QKCNSENIRE NEDSVPEALA 480 TYMAGRIDGL SFQKHDQIVD AANSAFVYNS VEDVKSIAVS HNITSMPPYS SSYGLFIKKE 540 SSEIIELPTN IFQTTVKDKT NCVNDFQSLS LDLTPSSSPG NSSPAMSMRN KISNPKTNDQ 600 TSSERYLLDS NKPSITEHVQ KSENSASKNA IGILTQAACL GKDSPPEKVL HNSGTSLEHG 660 PQMKELELNS SETMVVGLHN EDPKPSKILS KFLSCIPASP GSAMECNANL NPAKVILDSN 720 VGTNSGLVCV ATTNGHVSAT SLISTCSIEG VGFPASDTVS SRXKIQKEAR TQKHSVDEEK 780 RGVVMDESYG RCAKQHINGT GLSFEQPRQF FS

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI SEVDLYKLEP WDLPEKSFLP  60
STDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KTLVFYRGRA  120
PQGERTDWVM HEYRLEENES EAGPCLQNAF VLCRVFKKSG LGEKSGEQYT TQVEKGDLSL  180
IKKNLSPGYF GDIEVHSEEQ SKPVEGIDAN SHLPSKISSK ILNDTTGDSA PLNKWLDILL  240
DDTNSNSSCV ALDEDTIHTQ VDAMPDTPRM QCDSACLPFD ESEFPQIPVN ISFSQYGVPN  300
VCLDAYFEEE RMLDEMLSAA SQDYTNSKAY HSFLGDTLAD ILNGGYIKVK HLLPSMEELE  360
NHDSCLWEVP NPSLHHDGTG IQICSRSPVL QSHKRGILSE GTAARRVRMQ LHKMEDSVER  420
NEKDVNVRHS QNMSNDWYDS KSDSTSCPEM QQLHFGQFDG QKCNSENIRE NEDSVPEALA  480
TYMAGRIDGL SFQKHDQIVD AANSAFVYNS VEDVKSIAVS HNITSMPPYS SSYGLFIKKE  540
SSEIIELPTN IFQTTVKDKT NCVNDFQSLS LDLTPSSSPG NSSPAMSMRN KISNPKTNDQ  600
TSSERYLLDS NKPSITEHVQ KSENSASKNA IGILTQAACL GKDSPPEKVL HNSGTSLEHG  660
PQMKELELNS SETMVVGLHN EDPKPSKILS KFLSCIPASP GSAMECNANL NPAKVILDSN  720
VGTNSGLVCV ATTNGHVSAT SLISTCSIEG VGFPASDTVS SRXKIQKEAR TQKHSVDEEK  780
RGVVMDESYG RCAKQHINGT GLSFEQPRQF FS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	4	164	18	174	NAC domain-containing protein 19
3swm_B	1e-52	4	164	18	174	NAC domain-containing protein 19
3swm_C	1e-52	4	164	18	174	NAC domain-containing protein 19
3swm_D	1e-52	4	164	18	174	NAC domain-containing protein 19
3swp_A	1e-52	4	164	18	174	NAC domain-containing protein 19
3swp_B	1e-52	4	164	18	174	NAC domain-containing protein 19
3swp_C	1e-52	4	164	18	174	NAC domain-containing protein 19
3swp_D	1e-52	4	164	18	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.7701	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LLW8	0.0	B8LLW8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-76	NAC domain containing protein 28