PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006258
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 752aa    MW: 83576.5 Da    PI: 5.1837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071952PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-15522568455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+Lq
  Psi006258 522 SHVLAERRRREKLNEKFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLQ 568
                8999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5213194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.739518567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-19519587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-16521572No hitNo description
PfamPF000107.7E-13522568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-20522588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-19524573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MAVMASANSS AIRKQLESVV QSIQWTYSIF WQLSNQQGVL EWSDGYYNGD IKTRKTVQPM  60
ELSNEELCLQ RTLQLRELYE SLSAGESNQP ARRPCAALSP EDLTDTEWYY LVCMSYTFAP  120
GVGLPGRTLA NGRLVWLCQA NEADSKVFPR ALLAKSASIQ TVVCIPIEDG VLEFGTTELE  180
REDPGLVQRT ISFFMEYPKP ICSEQSTSSP QCSDRDEKDQ VGMMTLLSSD SIVCLGRNQI  240
GASTITDCGQ YLPTPHEDLD LPIQTFEQKD KISITEDPQQ HGLNESMQVE ICEDYKASGS  300
PEDHCCNGDA GPHEFPLISA ENDCLQNGHV NLNPAALEGW PYMEDNTSHG LQASGECVTQ  360
SIVDPSPQLC TYSQRDMNMN MNVLLGLEQG SNALETMLES AAQTLDEDGH YSRTLSTILE  420
QQQAGNLTES TGFISTKPGK DWRSRHSRQG SGFIHWKSNG NCVVGIKAVA SPQKILKKVL  480
FNLARLHSKY KEDPNYSPKL GEEDIGSKLV GRKIGQEDLS VSHVLAERRR REKLNEKFIV  540
LRSLVPFVTK MDKASILGDA IEYLKQLQRR VEELEASSKV MEAEMRKTQN RNLPKRSCSS  600
TEDMRMARHG GNHVDSCLQS SCLDGELGWT LTDTKQPPSK MPRLESKRKL NDLHKKGSCT  660
LPAREDTEVS VSVIEDDAVL IEIQCPCRHG VLLDIMQRLS SLHLDTCSVQ SSTADKMFAA  720
VLKAKVQEKF GGSKRPSIAE VKEAVELVAS KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-2481945192Transcription factor MYC3
4rqw_B9e-2481945192Transcription factor MYC3
4rs9_A9e-2481945192Transcription factor MYC3
4yz6_A9e-2481945192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526531ERRRRE
2527532RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQ880.0B8LQ88_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-74bHLH family protein