PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006260
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Dof
Protein Properties Length: 749aa    MW: 82866.7 Da    PI: 6.595
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073683PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.51.2e-37310369261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                ++k l+cprCds+ tkfCyynny+++qPr+fCk C+ryWt GG++rnvPvG+grrknk+ 
  Psi006260 310 TDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHL 369
                67889****************************************************985 PP
2Myb_DNA-binding31.73.6e-10434475346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT eE + l++a+ ++  + Wk +a+++g ++++ +c+sr+ +
        Psi006260 434 EWTDEETLVLLEAIFLHNDD-WKCVAQHVG-TKSEADCVSRFIQ 475
                      7****************988.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.96E-3063157IPR009057Homeodomain-like
PROSITE profilePS5093427.69864161IPR007526SWIRM domain
Gene3DG3DSA:1.10.10.102.2E-3165162IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF044333.8E-2867152IPR007526SWIRM domain
PfamPF027018.2E-31312368IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.053314368IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-24316367IPR003851Zinc finger, Dof-type
PROSITE patternPS013610316352IPR003851Zinc finger, Dof-type
PROSITE profilePS5129317.176430481IPR017884SANT domain
SuperFamilySSF466892.24E-11431488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-6431473IPR009057Homeodomain-like
SMARTSM007175.1E-8431479IPR001005SANT/Myb domain
CDDcd001672.93E-7434476No hitNo description
PfamPF002491.6E-9434476IPR001005SANT/Myb domain
PfamPF164956.6E-21659736IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MASPSNTNTS GNTNKDPNPE TTSNQAGSPH DSSNAGIADT ANPPTVLQPD FKEGSSPPRH  60
REIYKIPKYS SWFAWDKIHG TERRFLPEFF DEKSAAKTPK VYKEYRDFII NRYRKNPHKR  120
ISFTEVRKML VGDVNSIRRV FDFLDNWGLI NYQVASSKQH TKAEGNAGGV GEKGAATRVL  180
GQKGSSEGNP PPGGTATNST VIDGKDKKGT EWQSGLLCNN CGADCSIARF DCLKEVISPK  240
SRDEGLSKEP GNSSGTNDCN VEGVKTSKQD PEKELPVTAM EEESKDEKGD ETNKEEVEQN  300
GNKDKLLRKT DKLLRCPRCD SSGTKFCYYN NYNVNQPRHF CKDCQRYWTV GGTMRNVPVG  360
AGRRKNKHLG THYWHTMKSV GLTPARTGAS DAAHYSGFVL CPKCYENGNY GLGLSASDFK  420
RIELKEVSQQ KSVEWTDEET LVLLEAIFLH NDDWKCVAQH VGTKSEADCV SRFIQLPFGE  480
QYIGNISNEV SDRRSSNVTG ENTVIKQVSS PKDRSTQDLQ DHVSNDDKHT MDDVLGPPLK  540
RRHLTPLADA SNPIMGQVAF LSAMVGSHVA EAAAHAAIAA LSEEDPSASQ VTNTQEAECP  600
NRKNDTGASG LEGSPKDFAI EDSKKESHGG TDQTTEDGDS LAGEKEMTTP TVEMRAATAT  660
ALGSAAVRAK LLADQEDQDI ENLFSTVVDT QMKKLQERIQ HFEEFDIVTE KERSQVEHIK  720
ELLFADRIRF IQNTIKSRFS GSKEKKKKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gjk_A1e-2766154593SWI/SNF complex subunit SMARCC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.48100.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWA40.0A9NWA4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.19e-32cycling DOF factor 3