PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006338
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 578aa    MW: 64255.8 Da    PI: 5.474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073240PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13396441454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f eLr ++P+       K++Ka+ L  A  YIk+L
  Psi006338 396 NHVEAERQRREKLNQKFYELRAVVPNV-----SKMDKASLLGDAAAYIKDL 441
                799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-5415205IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-17391458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-12395441No hitNo description
Gene3DG3DSA:4.10.280.106.4E-18396462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10396441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16398447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MASSAVDQRF SQETLQQRLQ TLVETASIVW TYAIFWQVSY ESSGAIQLCW GDGYYKGSRN  60
TEEDERLRMR SRLTVSPADQ ELRKKVLRDL HSMISGSDEG NQQDNSSVSV DEEVTDAEWF  120
YLISMMQSFL SGFGVPGTAF STGAPVWIVG AERLRVSTCE RARQAHDLGI QTLVCVPIQG  180
GVVEFGSTED IVENWLFLEQ VNRSFKYNLN QTHDNLFQIQ SLWPEETLSV KSSNTMQSAP  240
CIEPVNNAEI QSLNSALARE LPVTGKQKAS VFAEQSSLVV KDDKSLLHPL TQQTEALEAP  300
AIRIPETVNG TEPQTRALGF KGSEKNVIKP SIKEDTIGLL SNPPGIAIGG LRSSIESELS  360
DAEPSASIKD STSAVVERKP RKRGRKPANG REEPLNHVEA ERQRREKLNQ KFYELRAVVP  420
NVSKMDKASL LGDAAAYIKD LCSKQQDLES ERVELQDQIE SVKKELLMNS LKLAAKEATD  480
LSSIDLKGFS QGKFPGLNSE VRILGREAII RIQCTKHNHP VARLMTALQE LDLEVLHASI  540
STVKDSLIIQ TVIVKMTRGL YTEEQLHALL CKKVADLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-4892083195Transcription factor MYC3
4rqw_B3e-4892083195Transcription factor MYC3
4rs9_A3e-4892083195Transcription factor MYC3
4yz6_A3e-4892083195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377385RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.40180.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLU30.0B8LLU3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-133bHLH family protein