PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006349

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 562aa MW: 61464 Da PI: 6.8737

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50072087	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6e-16	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Psi006349 44 RERWSEEEHLKFLEALKMYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 88 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-15	38	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.907	39	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-9	41	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-16	42	91	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-12	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	44	87	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-9	46	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MKMSLPSNIL TLSGDSNSNS NSICSSGDEL AAKVRKPYTI TKQRERWSEE EHLKFLEALK 60 MYGRAWRRIE EHIGTKTAVQ IRSHAQKFFS KLVRGSSSKG VSSTERTQDI DIPPPRPKRK 120 PRHPYPRKAV GTAHQSGSPA SKEGDILPSV VSSVPLLSLG DGPCKRARFD RHNAKTRLCN 180 SNNGQEVKME SPRLSSSPLS LKLFGQTMLV STIEGPNTFS TEPAVSNNQG DFHEFVPVQQ 240 ETSPLKIKAK NQILDDGNEI LHSYTLKSHT TAAVNSVLHS GSVSTADKDC REKTDSDEQI 300 YSELDTNSSC LTRNQESPSI FSGYPRHVSV QCVVDGAVSE NVNEVVNMTP SAHSALAMSM 360 SNNTSSLSKD EIMSPWPSTF SPVFPWVQMQ NGDTAVAEAV AVATVAAASA WWSLYGAVPS 420 LLHPRMFSGA TAAENISSVC KAETVGGGRE QSQSNTTERE GETLLQGSQS ENYTSSLIQE 480 SNDARRHAEK QSCQTEEEDQ IMKETELGKE RSQCASNTPS SNDPEIDPYS GTNIQENTRN 540 CVQSLQRNGG GYIPEAEKKK KX

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MKMSLPSNIL TLSGDSNSNS NSICSSGDEL AAKVRKPYTI TKQRERWSEE EHLKFLEALK  60
MYGRAWRRIE EHIGTKTAVQ IRSHAQKFFS KLVRGSSSKG VSSTERTQDI DIPPPRPKRK  120
PRHPYPRKAV GTAHQSGSPA SKEGDILPSV VSSVPLLSLG DGPCKRARFD RHNAKTRLCN  180
SNNGQEVKME SPRLSSSPLS LKLFGQTMLV STIEGPNTFS TEPAVSNNQG DFHEFVPVQQ  240
ETSPLKIKAK NQILDDGNEI LHSYTLKSHT TAAVNSVLHS GSVSTADKDC REKTDSDEQI  300
YSELDTNSSC LTRNQESPSI FSGYPRHVSV QCVVDGAVSE NVNEVVNMTP SAHSALAMSM  360
SNNTSSLSKD EIMSPWPSTF SPVFPWVQMQ NGDTAVAEAV AVATVAAASA WWSLYGAVPS  420
LLHPRMFSGA TAAENISSVC KAETVGGGRE QSQSNTTERE GETLLQGSQS ENYTSSLIQE  480
SNDARRHAEK QSCQTEEEDQ IMKETELGKE RSQCASNTPS SNDPEIDPYS GTNIQENTRN  540
CVQSLQRNGG GYIPEAEKKK KX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	RPKRKPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M4Q9T9	0.0	M4Q9T9_PICAB; CCA1-like protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	4e-33	MYB_related family protein