PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006419

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 497aa MW: 56141.4 Da PI: 5.2201

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41648906	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.4e-16	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+++++da k++G W+ I +++g ++++ q++s+ qk+ Psi006419 65 RERWTEDEHKKFLDALKLYGRS-WRHIEEHIG-TKSAVQIRSHAQKF 109 78****************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-15	59	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.89	60	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-8	62	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-15	63	112	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-12	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	65	108	IPR001005	SANT/Myb domain
CDD	cd00167	7.63E-10	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MNSLSIIIST QDALKHSSTG EEIVLEGLYL MESYSIDRVE EGETHFSIDE PFSKVRKPYT 60 ITKQRERWTE DEHKKFLDAL KLYGRSWRHI EEHIGTKSAV QIRSHAQKFF TKLEKGASTG 120 TSSTMTYQYL EIPPPRPKRK PGHPYPKKTG VIDRGGDFSI LEEDSRTRGC EVSERECSKL 180 TELAQHNSKS MSLDKPKMTQ GTSQPSRMST SLKLFGQTLV VQNSFTDDFL FTSVENEAIC 240 SEIYPENKDA PCEDEILDCR RIRKDTFSPE ESETDTFQSV NNSTGKTTIH KSSVFSNTNR 300 SPALLNSCHS SSSENENIQC SYPQVLRDGG LEDGLQQKPE VPDIKCEYTH QSQQEDETQR 360 NKDKIGLEAQ PGNIVLQSNP KPTPLMEGCS FKMASASQSD YVDPLKEEYS MTFHHSETSV 420 DSILDFQILH EMSSIGFCRH IQIEKDVLPF SRSQGSMLCS EIRGENRTYS GAGFVPYKGC 480 QKDGQYPGES DAEECNL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MNSLSIIIST QDALKHSSTG EEIVLEGLYL MESYSIDRVE EGETHFSIDE PFSKVRKPYT  60
ITKQRERWTE DEHKKFLDAL KLYGRSWRHI EEHIGTKSAV QIRSHAQKFF TKLEKGASTG  120
TSSTMTYQYL EIPPPRPKRK PGHPYPKKTG VIDRGGDFSI LEEDSRTRGC EVSERECSKL  180
TELAQHNSKS MSLDKPKMTQ GTSQPSRMST SLKLFGQTLV VQNSFTDDFL FTSVENEAIC  240
SEIYPENKDA PCEDEILDCR RIRKDTFSPE ESETDTFQSV NNSTGKTTIH KSSVFSNTNR  300
SPALLNSCHS SSSENENIQC SYPQVLRDGG LEDGLQQKPE VPDIKCEYTH QSQQEDETQR  360
NKDKIGLEAQ PGNIVLQSNP KPTPLMEGCS FKMASASQSD YVDPLKEEYS MTFHHSETSV  420
DSILDFQILH EMSSIGFCRH IQIEKDVLPF SRSQGSMLCS EIRGENRTYS GAGFVPYKGC  480
QKDGQYPGES DAEECNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NW27	0.0	A9NW27_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	9e-33	MYB_related family protein