PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006424
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 493aa    MW: 54639.5 Da    PI: 5.2879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-7495PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-152471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++  + G g+W+ +a+  g+ R++k+c++rw +yl
        Psi006424 24 KGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYL 71
                     678*******************************************97 PP
2Myb_DNA-binding50.16.5e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++
        Psi006424  77 RGAFSPQEEQLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 120
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-241874IPR009057Homeodomain-like
PROSITE profilePS5129418.4471971IPR017930Myb domain
SuperFamilySSF466897.26E-2921118IPR009057Homeodomain-like
SMARTSM007171.8E-122373IPR001005SANT/Myb domain
PfamPF002494.5E-152471IPR001005SANT/Myb domain
CDDcd001671.23E-102771No hitNo description
PROSITE profilePS5129426.05372126IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2675127IPR009057Homeodomain-like
SMARTSM007172.8E-1576124IPR001005SANT/Myb domain
PfamPF002497.1E-1577120IPR001005SANT/Myb domain
CDDcd001673.30E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
DSRLKMSCTT GGLTSPISKP KLRKGLWSPE EDDKLINYMM KNGQGCWSDV AKQAGLQRCG  60
KSCRLRWINY LRPDLKRGAF SPQEEQLIIH LHSILGNRWS QIAARLPGRT DNEIKNFWNS  120
CIKKKLKHLS ASNNNSKSIC ASNRTNTMNS SMTPFSESSA QPLEVMPTRY QPPNAFNHEV  180
PTAENQFCIP DVLALRHEQV QNQNQFSIDQ DSATNNLISQ LWNSNSISVS THESFSHAFM  240
SPSLQAQGHA IKTPIKPCDQ ISWSTPLTRE AAGSHACNYS LGCSIPALVE SESLKDKFKN  300
DAGDQINENE IIYSSTASSV ITAWSTNSYS DAEYCTVDPH DQVGSILEDY VSHEKTTDQP  360
CPPLNSSLQF GAPAIRWTAD QSNDEEYDCK DRLNLRYDVN LAYPNSTNDK QNGYQLPQIG  420
GGVNGDQWDC ARIPNMEEAN STTPTSTILG GSGQFEFECD GDAGGQVTAW AHDVMYNDIH  480
TAASDLLGQI YFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28201263108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB1PPT60.0B1PPT6_PINPS; R2R3-Myb4 transcription factor (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-66myb domain protein 46