PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006448

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GeBP

Protein Properties

Length: 482aa MW: 54798.6 Da PI: 7.893

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50073373	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	46.7	8.6e-15	182	280	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk......aksgkepsfskehdqkifelskkiWg 97 ++ ws +De+++ Gli++ +k gk ++++ +y++vk ++ ++++sql +K r ++Kf+ +k + +++e +f+++h+ +el ++Wg Psi006448 182 SQHWSPKDELAFFNGLISY-SKGGKAFPSNMTSVYDYVKPMLDKQFNNSQLYNKFRWGRNKFHSITAKievnnySFQKNEYKFENPHQGALYELWIQLWG 280 677**************.677777788*******************************9999776666668999*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.3E-16	183	280	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MLSTDYTTDD ADTYSSSSPS EESGDPFTYQ LKAITSSDSD DDSDDESDYP VPPPKTQKIK 60 RQQQKQRSQL PSAFTNRSAC GDEKTADARR KRRRVHGNDG IPERTTKKKI TEGDKAQKQK 120 FTGIASTSKE EEAPTIGAEA AGAFKRKKIA VENVTTSKDT KKAQKQNVNL AETLNTPSSK 180 ASQHWSPKDE LAFFNGLISY SKGGKAFPSN MTSVYDYVKP MLDKQFNNSQ LYNKFRWGRN 240 KFHSITAKIE VNNYSFQKNE YKFENPHQGA LYELWIQLWG EKDKGGNAHV NHVKHANTVS 300 VDHNGEKKKH AREKKKHVEA EACNASLDCK GKKKNHFEVE EADTHKIISE EEQNRQEEDR 360 EDVPKNKETS LSKRKAGEVQ ISREMYNLFC EERDAALNEL KNVVQKIFND TNSEIKAMLE 420 XSFPLTLGII FIYPTMKYFA RQNNINKECL DIEAYSERLN LLQKECQMHL EDLGAAIGND 480 SS

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MLSTDYTTDD ADTYSSSSPS EESGDPFTYQ LKAITSSDSD DDSDDESDYP VPPPKTQKIK  60
RQQQKQRSQL PSAFTNRSAC GDEKTADARR KRRRVHGNDG IPERTTKKKI TEGDKAQKQK  120
FTGIASTSKE EEAPTIGAEA AGAFKRKKIA VENVTTSKDT KKAQKQNVNL AETLNTPSSK  180
ASQHWSPKDE LAFFNGLISY SKGGKAFPSN MTSVYDYVKP MLDKQFNNSQ LYNKFRWGRN  240
KFHSITAKIE VNNYSFQKNE YKFENPHQGA LYELWIQLWG EKDKGGNAHV NHVKHANTVS  300
VDHNGEKKKH AREKKKHVEA EACNASLDCK GKKKNHFEVE EADTHKIISE EEQNRQEEDR  360
EDVPKNKETS LSKRKAGEVQ ISREMYNLFC EERDAALNEL KNVVQKIFND TNSEIKAMLE  420
XSFPLTLGII FIYPTMKYFA RQNNINKECL DIEAYSERLN LLQKECQMHL EDLGAAIGND  480
SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	RKRRR
2	90	94	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LLG8	0.0	B8LLG8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.1	7e-08	DNA-binding storekeeper protein-related transcriptional regulator