PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006480

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 460aa MW: 50435.7 Da PI: 7.8436

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50072858	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-13690	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9.2e-10	50	75	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C yG +C+F+H+p Psi006480 50 GEQDCAYYMRTGLCGYGMNCHFNHPP 75 6789********************97 PP
2	zf-CCCH	37.9	3.1e-12	92	117	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f++tG CkyG++Ck++H++ Psi006480 92 GQPECKHFMKTGVCKYGATCKYHHPR 117 789*********************96 PP
3	zf-CCCH	40	6.5e-13	136	160	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG +CkF+H+ Psi006480 136 GEKECPYYMRTGSCKYGVTCKFHHS 160 6789********************8 PP
4	zf-CCCH	26.9	8e-09	309	334	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG CkyG +C+++H++ Psi006480 309 DQPQCQHYMKTGCCKYGTTCRYHHPK 334 6789********************96 PP
5	zf-CCCH	31.3	3.4e-10	354	379	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++r+G+Ck+G+ CkF H+ Psi006480 354 PGQPTCPFYSRYGICKFGPICKFDHS 379 57899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.5E-5	48	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.624	48	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-7	50	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-6	52	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	54	74	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.525	90	118	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	90	117	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-9	91	117	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	93	118	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-5	96	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.0E-6	134	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	134	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.54	134	162	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-10	136	160	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-5	140	160	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0072	307	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.234	307	335	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-6	309	334	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	310	336	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-5	353	380	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.967	353	381	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-7	355	379	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MHENWHLRPR PSPSLPGDAL EEAMLQMTIQ SHDPLEEIGT SSGPYPERPG EQDCAYYMRT 60 GLCGYGMNCH FNHPPNVKRA AQYMNELPER FGQPECKHFM KTGVCKYGAT CKYHHPRDRD 120 GSKVQLNYLG LPMRQGEKEC PYYMRTGSCK YGVTCKFHHS DPTALLPDSG SPVYAAAELS 180 LSPASGSTYP AGLASWSLQR APYVSGPCLQ GSPTYMPVIL SPQQSTPSVQ PGWSTYHGPI 240 SPLSSPEGKR QLGTGTVYSS SYMTGSSSSR HMRGALSPPV QGSSTAMEHP GVQSQVAAPQ 300 REAFPERPDQ PQCQHYMKTG CCKYGTTCRY HHPKERVALS PWCMFSSQGL PLRPGQPTCP 360 FYSRYGICKF GPICKFDHSL TGPNCNPAAF SPSELQTTLY PKGDSSEALF RSTSEEFSER 420 VLKATDQYAK DGELSSFKLQ STEEGSGDTL AAKSPSTSAI

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MHENWHLRPR PSPSLPGDAL EEAMLQMTIQ SHDPLEEIGT SSGPYPERPG EQDCAYYMRT  60
GLCGYGMNCH FNHPPNVKRA AQYMNELPER FGQPECKHFM KTGVCKYGAT CKYHHPRDRD  120
GSKVQLNYLG LPMRQGEKEC PYYMRTGSCK YGVTCKFHHS DPTALLPDSG SPVYAAAELS  180
LSPASGSTYP AGLASWSLQR APYVSGPCLQ GSPTYMPVIL SPQQSTPSVQ PGWSTYHGPI  240
SPLSSPEGKR QLGTGTVYSS SYMTGSSSSR HMRGALSPPV QGSSTAMEHP GVQSQVAAPQ  300
REAFPERPDQ PQCQHYMKTG CCKYGTTCRY HHPKERVALS PWCMFSSQGL PLRPGQPTCP  360
FYSRYGICKF GPICKFDHSL TGPNCNPAAF SPSELQTTLY PKGDSSEALF RSTSEEFSER  420
VLKATDQYAK DGELSSFKLQ STEEGSGDTL AAKSPSTSAI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.11827	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252579.1	1e-132	PREDICTED: zinc finger CCCH domain-containing protein 3
Swissprot	Q2R4J4	1e-106	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	B8LMU3	0.0	B8LMU3_PICSI; Uncharacterized protein
STRING	XP_010252578.1	1e-131	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-92	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]