PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006715

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 384aa MW: 42924.2 Da PI: 5.4826

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50823779	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.9e-34	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Psi006715 36 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.86	33	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-33	33	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-17	35	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-9	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-27	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSSLEKPPSF EETQSGPLEG TNLPGDACLV LTTDPKPRLR WTTELHERFV DAVTQLGGPD 60 KATPKTIMRA MGVKGLTLYH LKSHLQKYRL GKQPFKEFSD QSNKDASCLT EGQGASTCSS 120 SKMINQDVNE SFQITEALRV QMEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SILEKACQAL 180 TDQTIASAGL EAARQELSEL AMKVSNGCLS SPFEDVNLPS LPEIPQIHVD ESTLHQQTQL 240 TDCSVDSCLT SNESTPKIPQ EDMQAVRNKR SRPLYCDNDA LVWDNDVRND LRLQELSAAC 300 LSQVGNLNEE EQMPSVSPIE SHSERNSMKD EFDTRMTKTK DGIGNPAERE LQSSPKLERP 360 AARRATHLVH DRISSQVKGG PFFL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSSLEKPPSF EETQSGPLEG TNLPGDACLV LTTDPKPRLR WTTELHERFV DAVTQLGGPD  60
KATPKTIMRA MGVKGLTLYH LKSHLQKYRL GKQPFKEFSD QSNKDASCLT EGQGASTCSS  120
SKMINQDVNE SFQITEALRV QMEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SILEKACQAL  180
TDQTIASAGL EAARQELSEL AMKVSNGCLS SPFEDVNLPS LPEIPQIHVD ESTLHQQTQL  240
TDCSVDSCLT SNESTPKIPQ EDMQAVRNKR SRPLYCDNDA LVWDNDVRND LRLQELSAAC  300
LSQVGNLNEE EQMPSVSPIE SHSERNSMKD EFDTRMTKTK DGIGNPAERE LQSSPKLERP  360
AARRATHLVH DRISSQVKGG PFFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.1223	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006840145.1	1e-140	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-109	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	C0PPV3	0.0	C0PPV3_PICSI; Uncharacterized protein
STRING	ERN01820	1e-140	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-111	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]