PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006763
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 372aa    MW: 42034.6 Da    PI: 5.2172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-30741PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09291333754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 +ErrRR+r+N+++  Lr+++P+ +      K++  ++L  ++eY k+L
  Psi006763 291 LAERRRRKRLNERLCMLRSVVPTiS------KMDRTSVLSDTIEYTKQL 333
                68*********************66......**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-15286351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7291333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-13291346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
XCGWNPISPW DFDENSIRHG YCQPSKCFKT ESREDGGDFG LSSGVELEQN AFGDGIVFKS  60
ENSNASHKDQ SLDLEKNSWE RFSGQALQSE LGLICTNVSD ISHVGSESSN FSLRYMHENF  120
RKTTIGQPYH GMSFNQYDEM EMNRRLFSYT TENVTSTLLD EQRTSIELFG IEGTKGIAAV  180
SVNEPDGYEG EMLLSTSYKT EIYSDEQSPD TVDLPVKHSE KMVPINTAER KVANKDGNRE  240
ENDSITKGLM VKNGDNGAMV TFTTGEIESS YAKAMGGGMR KGKGQPAKNL LAERRRRKRL  300
NERLCMLRSV VPTISKMDRT SVLSDTIEYT KQLLHQIRFL QRELEHQTDW PALLEPINDT  360
FGQRPWLGNK NL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292299ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-10bHLH family protein