PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006764
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 372aa    MW: 41459.6 Da    PI: 4.7863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071477PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4279PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
        Psi006764 14 KGPWTLDEDQILVSYINNHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding47.34.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++ ++ G++ W+tIa++++ gRt++++k+ w+++l
        Psi006764  67 RGNFSPEEEDHIIKLNQLIGNR-WSTIASHLP-GRTDNEIKNVWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.427961IPR017930Myb domain
SuperFamilySSF466895.62E-3010108IPR009057Homeodomain-like
SMARTSM007176.3E-131363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001672.15E-101661No hitNo description
PROSITE profilePS5129422.35762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2665116IPR009057Homeodomain-like
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PfamPF002491.8E-1367112IPR001005SANT/Myb domain
CDDcd001673.70E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGPWTLD EDQILVSYIN NHGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LKPDIKRGNF SPEEEDHIIK LNQLIGNRWS TIASHLPGRT DNEIKNVWNT HLKKRLARMK  120
AEAEAESVAV HAQPAPSSSL DSSTAKMAYH GSNPLSSQIL CNSYARAPSA WEICDPVYVL  180
PELSEDLIAS SNNMCTSTID YQTTSPASTL DVLHSDCIDS LELEIDHSRL SINTLDELQC  240
QPLSRDMQIF IGNDRNNFED PAGVPAISQD DKAEMVTSSS QGMRSDCDGE IVISEESLKS  300
SMNLRVDSLV QQLDGAEVDW FLDHLDNMSP AMDSNHLSKN TINLCRTDLE AGDGMDYWLN  360
LLRQVQPLPL FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189153.14e-71PREDICTED: myb-related protein Myb4-like
TrEMBLB8LRH40.0B8LRH4_PICSI; Uncharacterized protein
STRINGAquca_017_00716.13e-68(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-71myb domain protein 15