PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006765
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 372aa    MW: 41276.9 Da    PI: 10.0309
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073520PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+ + +++a +++G++ Wk++++++  +Rt +++
        Psi006765 46 QWSKEDLQNFYEAYRKYGKD-WKKVSAMIR-NRTIEMV 81
                     6*****************99.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-114191IPR009057Homeodomain-like
SMARTSM007171.5E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-54585IPR009057Homeodomain-like
PfamPF002491.6E-84681IPR001005SANT/Myb domain
CDDcd001671.47E-64781No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MASSRKPRIA SRRTGKATEG AAEKDDDGTY KNRQRKRKLS DMLGPQWSKE DLQNFYEAYR  60
KYGKDWKKVS AMIRNRTIEM VEALYSMNKA YLSLPDGTAS AAGLIAMMTD HYNILEGSNS  120
DRDSSDGFGA SGRPQKQTRL KQKFTSTNNF DRSYSDLLQC RSGPSNYGCP SPVKKRRSGG  180
SRPRVVGKRT PRFPVSYTLE KQNSEAVLYG KHEPAFDGDH DDYDVAKAAA LTLAEASQRA  240
ASPQVSRTPS RMTLQMRASP VQNGDLKGSY ARNESGVSAI KHTGSTMDEG SLEGSQESRE  300
VGNGGITKAD EQIIPGETRM KAAHNLKSRV RRPPIKKFKS HGLEQECFDD VKEECSCTEE  360
GVGVKDEKKK KX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.203500.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241815.14e-98PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A200Q0W21e-100A0A200Q0W2_9MAGN; SANT/Myb domain
STRINGXP_010241815.12e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-49DNA binding