PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006842

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 353aa MW: 37884.7 Da PI: 8.5892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-28005	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l + v++ G+++W++I++ ++ gR++k+c++rw + Psi006842 18 KGPWSPEEDAALQHFVQKCGPRNWSLISKAIP-GRSGKSCRLRWCNQ 63 79****************************.*********985 PP
2	Myb_DNA-binding	57.8	2.5e-18	72	114	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +++a++q+G++ W+tIar++ gRt++ +k++w++ Psi006842 72 PFTPEEDATIIRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 114 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.144	13	68	IPR017930	Myb domain
SuperFamily	SSF46689	3.56E-32	15	111	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-15	17	66	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-17	18	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-25	19	71	IPR009057	Homeodomain-like
CDD	cd00167	1.60E-14	20	62	No hit	No description
SMART	SM00717	1.3E-15	69	117	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.278	70	119	IPR017930	Myb domain
CDD	cd00167	8.48E-13	72	115	No hit	No description
Pfam	PF00249	1.9E-15	72	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-23	72	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASMKGKSSG HDEPDRIKGP WSPEEDAALQ HFVQKCGPRN WSLISKAIPG RSGKSCRLRW 60 CNQLSPQVEH RPFTPEEDAT IIRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ 120 GGGALVIDDE ITSGADGFRK RSLSDDADAS RKLKKLSLGT TATTTTTEPC SSSASDRSDS 180 SLALGSPPVY RPVPRAAPLS LTNEANLNPS HHEASCSSTD PPTSLCLSLP GTDAPARPTV 240 ALNALPLPGT SSPLAPPGYI KAEEAMEWMN SAINTTLTQV LSPFVAPARS HGIMPETLGS 300 SGLLAVMQEM VAKEVRDYMS SMQHRNNNNT EFRGCVASPP PMGMRVSNSN ALG

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASMKGKSSG HDEPDRIKGP WSPEEDAALQ HFVQKCGPRN WSLISKAIPG RSGKSCRLRW  60
CNQLSPQVEH RPFTPEEDAT IIRAHAQHGN KWATIARMLS GRTDNAIKNH WNSTLRRRCQ  120
GGGALVIDDE ITSGADGFRK RSLSDDADAS RKLKKLSLGT TATTTTTEPC SSSASDRSDS  180
SLALGSPPVY RPVPRAAPLS LTNEANLNPS HHEASCSSTD PPTSLCLSLP GTDAPARPTV  240
ALNALPLPGT SSPLAPPGYI KAEEAMEWMN SAINTTLTQV LSPFVAPARS HGIMPETLGS  300
SGLLAVMQEM VAKEVRDYMS SMQHRNNNNT EFRGCVASPP PMGMRVSNSN ALG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	9e-38	14	119	54	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-38	14	119	54	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A5JYF0	0.0	A5JYF0_PICGL; R2R3-MYB transcription factor MYB6
STRING	VIT_18s0001g09850.t01	2e-85	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-66	myb domain protein 77