PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006868
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Dof
Protein Properties Length: 348aa    MW: 37810.8 Da    PI: 5.8515
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422238PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-15771PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1161.6e-3663122261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                +++ lkcprCds ntkfCyynny+lsqPr+fCka rryWtkGG lr vPvGgg+rknkk+
  Psi006868  63 PSQVLKCPRCDSLNTKFCYYNNYNLSQPRHFCKAYRRYWTKGGVLRSVPVGGGCRKNKKT 122
                56889*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2561121IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3165121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.91367121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSELVLDAM RNLPNNRFAA SSIEMLAAMP DQISDEPPPD SSALFAAPRG GRLTGERRAR  60
PHPSQVLKCP RCDSLNTKFC YYNNYNLSQP RHFCKAYRRY WTKGGVLRSV PVGGGCRKNK  120
KTRPRNPDPM KSSSFSPADA SSSENSTVTG TPSSSSSNSR VNTPAGDGTA GLYGFGLELQ  180
EALTERANCS VPAEECSTVP VPAPFNGLTT LDYGTVDAMD QQIHVNPELL NSGDLLDASS  240
CSFGDLIGSS NLAGVTLADL QWKLQQQHKL ASLFGEGSNS NNFDTVAAQN GNNYSSHIHN  300
SYSNAIPLHW QTNNNNMDAL FEDLYNWGTE TELNWPDQAP ILHTSKIG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.75490.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8780.0D5A878_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.13e-33OBF binding protein 4