PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006909
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 340aa    MW: 37988.7 Da    PI: 8.2763
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-1831484PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.17.2e-90230238339
       GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpe 137
                +qR++++f+ ALa+rl++  +    ++++s++ +k+ +  + a+k++++++P+ kf++lt NqaIlea++++e++Hi+Df+i qG+QW+aLl+a+a+Rp+
  Psi006909   2 TQRIVFHFADALAKRLSKGIE-QKPQFQSSDECSKSFEGLTLAYKALNDACPYSKFAQLTGNQAILEAMDKAEKIHIVDFGIVQGVQWAALLHAFATRPG 100
                79***************9333.333445555555667888999********************************************************7 PP

       GRAS 138 gpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                g+p +++iTg+ +p+ g   + +l +tg+rL++fA+ l+++fef + v+k+++++el++L+++++E++aVn++lql++ll   ++++++  ++Lkl   l
  Psi006909 101 GKPqKIKITGIPAPTLGqnPTSSLLATGKRLTEFAKLLDLEFEFCP-VSKHMSEVELSTLKIEQDECIAVNFMLQLYNLL---GDSPEPLVKILKLAHAL 196
                77769*********999888999***********************.7********************************...666666678******** PP

       GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                sPkvv++ e ea +n+  F  rf +al+y+sa+fds+  ++++r+  er +vE+ +++++i+ +va egaer+ r e   +Wr  +e+aGFk  +ls++a
  Psi006909 197 SPKVVTLGEYEAYLNACHFQVRFRNALDYFSAFFDSMePTNMSRDCAERLNVEKLFFAEKIMGIVAFEGAERKTRLEGRDQWRILMESAGFKFTNLSHYA 296
                *************************************778999999****************************************************** PP

       GRAS 334 akqakl 339
                 +qa+ 
  Psi006909 297 KSQAEF 302
                ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.3871317IPR005202Transcription factor GRAS
PfamPF035142.5E-872302IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
XTQRIVFHFA DALAKRLSKG IEQKPQFQSS DECSKSFEGL TLAYKALNDA CPYSKFAQLT  60
GNQAILEAMD KAEKIHIVDF GIVQGVQWAA LLHAFATRPG GKPQKIKITG IPAPTLGQNP  120
TSSLLATGKR LTEFAKLLDL EFEFCPVSKH MSEVELSTLK IEQDECIAVN FMLQLYNLLG  180
DSPEPLVKIL KLAHALSPKV VTLGEYEAYL NACHFQVRFR NALDYFSAFF DSMEPTNMSR  240
DCAERLNVEK LFFAEKIMGI VAFEGAERKT RLEGRDQWRI LMESAGFKFT NLSHYAKSQA  300
EFFCIITVRG ILYKNPRVSS LWHGKLGLSS LSQPGAVASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-108230340339GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022752130.11e-113scarecrow-like protein 4
SwissprotA0A024B7I01e-113SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0B4U7620.0A0A0B4U762_PINRA; SCL2 (Fragment)
TrEMBLA0A2U7MTK50.0A0A2U7MTK5_PINRA; PIN2 protein
STRINGPOPTR_0005s12520.11e-111(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-103GRAS family protein