PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006950
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 331aa    MW: 36346.7 Da    PI: 8.3732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648416PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.8e-06155202655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                + +Er+R  +++   ++L +llP+     +++K   ++ L +A ++I++Lq
  Psi006950 155 KLVERQRHYKMKALCSTLTSLLPEeY---RKTKHILSDKLLEASKHICHLQ 202
                579*********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.12E-4154205No hitNo description
Gene3DG3DSA:4.10.280.102.3E-6154217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.6E-6154217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
XYSQGAACLP HYHGNIDTNE GIQIQTPTES IKFVEPGTCI DHDAPAAVIF DALSTKRPHD  60
YGLLGTASLG PVVQPDQTAE DDSSQAIAQY WQKLVANIGN PAQTLTCNSP ANSLLNSSNS  120
RFPPTRSHRR KKAAAGGGGG HDHEASEESI GNLRKLVERQ RHYKMKALCS TLTSLLPEEY  180
RKTKHILSDK LLEASKHICH LQDKVMQLGK KRDELKFSAT VKPISNSSCV YKNLQASQAR  240
PSNVPDKYQT IRVGKFGPGI QVTVNTFKNQ IDFSSLLMVL EEAGVEVVSA TVSDINDRAF  300
YSIHSKLSDF RHFDSAVLHG RIDQLINGNL P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NXF21e-118A9NXF2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-13bHLH family protein