PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006999
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 321aa    MW: 34223.1 Da    PI: 5.754
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-8053PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.6e-18232266135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  Psi006999 232 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 266
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-691321IPR016679Transcription factor, GATA, plant
SMARTSM004013.5E-15226276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569226262IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13227288No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13230264IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.22E-12231281No hitNo description
PfamPF003201.1E-15232266IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESYAGESSP EVIWSGGGEE AFGIDDLLDF SCEDIGAPTG GAGCSHGEKS HPESAFSEPN  60
SGDSSVTETE AAAAAAATCD EVSRPAPNVV EVDGSGGVCL FSGELCVPAD ALEELEWLST  120
FVDDSFVAVP ELVVPVDSVR EPSEREESQR KQSNALLAGA GRTWVLGRAR SKRSRCVNPA  180
VFVSVALKND EPRTGRKAAM KGSVCVAPPA AVKKAKKGCQ SRSGGGQESR RCSHCLVQKT  240
PQWRTGPLGP KTLCNACGVR FKSGRLLPEY RPALSPTFSS GLHSNCHRRV VEIRRQRIDQ  300
QQPLSQQETS SLTDNSMTYY S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.43440.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKB30.0B8LKB3_PICSI; GATA transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-45GATA transcription factor 4