PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007014
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 319aa    MW: 35546.1 Da    PI: 6.8412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649307PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09131178455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Psi007014 131 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQALQ 178
                8*************************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-16125195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-10125182No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAQRLDISGG NDSSISELEQ TNAHPDLTSK DIINLRKRKC LSNPKVKVAD VHSIPPKTKE  60
TDETERNGKH YKVGESTKDK DDLKDKLEES NSAETAESCP KQTVDNAKPS SVSVKQDYIH  120
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKAVMLDEI INYVQALQCQ  180
VEFLSMKLAA VNPQLDCNVE GGYLTRDVLQ PHCSSISKMF APDTTAAASQ INQLQKTPLQ  240
HGLQCRADRQ ELAIRGMMDT QFTCMNGYAD PTFQLQMSQG WDDEFQNAVD IGLDQNRSNP  300
LKSHGFHGVL PTGHMKVEL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261471.17e-71PREDICTED: transcription factor bHLH49
RefseqXP_010261481.17e-71PREDICTED: transcription factor bHLH49
SwissprotQ9CAA91e-54BH049_ARATH; Transcription factor bHLH49
TrEMBLA9NUY00.0A9NUY0_PICSI; Uncharacterized protein
STRINGXP_010261463.13e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.29e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]