PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007094
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 306aa    MW: 34207.1 Da    PI: 6.7044
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-908PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.71.4e-22151082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHH.HHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSF.vRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                   Fl+k+y++++d++++ ++sws  +nsf+v++++ef++ +Lp+  + + nf  +   QLn+YgF+k++ e+         weF+++ F kg+++ll++
     Psi007094  15 FLTKTYDMVDDPATNAMVSWSPGSNSFIVWNPTEFSRVLLPHLLQATaNFLQLrPXQLNTYGFHKIDPER---------WEFANEGFLKGHRHLLKN 102
                   9************************************9999988754144444346***********999.........****************** PP

                   XXXXXX CS
  HSF_DNA-bind  97 ikrkks 102
                   i+r+k 
     Psi007094 103 IHRRKP 108
                   ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-2410106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-3811106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.7E-2611106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-81538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-2015106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-86880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGSQNGSSN GPPPFLTKTY DMVDDPATNA MVSWSPGSNS FIVWNPTEFS RVLLPHLLQA  60
TANFLQLRPX QLNTYGFHKI DPERWEFANE GFLKGHRHLL KNIHRRKPVH SHSQQQQKGE  120
SLSGGACVEI KQLEDETEKL RQEKQGLVME LVRLKQLVQH HDKIAHIATT NKKRRLPKHD  180
EVLEIGENGC TSSQIVRYDP GKGDAFNRDS PDKLETSMDA FKNFFDDVPV DARDKAKDCG  240
SPQSHSSEPP LTEMHGKSCF PDMPVSLGVS DIYTSSALSD LNSSSRLPEM SISLRSQDVQ  300
ASTGLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-15710613120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.75410.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.26e-70heat stress transcription factor A-1 isoform X1
TrEMBLA0A0C9S8X05e-86A0A0C9S8X0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2945_1895 transcribed RNA sequence
STRINGERN155153e-69(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.14e-52heat shock transcription factor A1D