PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007154
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 300aa    MW: 31293.2 Da    PI: 4.8362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647911PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12103148555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri + +  L+el+P+a      K +Ka++L + ++Y+k Lq
  Psi007154 103 HSIAERERRERIAKNLKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 148
                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1598157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.34898147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-12102152No hitNo description
PfamPF000102.7E-9103148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDIFDQLLS SSWEDINGAD RSSLDSSAGG PTNCLPGDSM GTLQASSRVS TMSVTPSSHM  60
SPNLEGQAQN NDVQNSSSSV IAGENTPYLL KELLVCSQAT DPHSIAERER RERIAKNLKS  120
LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAGAVAPLIA DVPAEGSGSL  180
ASAALGQAGG SLSQDGLAFE QNVVKLMEKD MTAAMQYLQN KGLCLMPIAL ATAISSSTGK  240
PLLGSGVTNS VDSTSDRQSS GNQPASLTVD SCSGALGMGS AGFGSDFLLK ENTVKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGEOY295799e-61(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-50LJRHL1-like 1