PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi007208
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 295aa    MW: 33616.3 Da    PI: 9.2122
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S26035368PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-091471841954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Psi007208 147 FEHflHPYPKDADKHLLARQTGLTRSQVSNWFINARVR 184
                664459******************************88 PP
2BELL124.93.1e-401081172
       BELL  1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               +rqelq+kkakL+ +l+eVd+rY+qy++q+++v+ssFea+ag g+ak YtslAlk+iSrhFr+L+daia+qi
  Psi007208 10 DRQELQMKKAKLVAMLDEVDRRYRQYYHQMHIVVSSFEAAAGFGAAKTYTSLALKTISRHFRSLRDAIAGQI 81
               699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-24279IPR006563POX domain
PfamPF075262.4E-37678IPR006563POX domain
PROSITE profilePS5007111.969125188IPR001356Homeobox domain
SMARTSM003896.2E-9128192IPR001356Homeobox domain
CDDcd000862.94E-11128189No hitNo description
SuperFamilySSF466891.54E-17129195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-29131195IPR009057Homeodomain-like
PfamPF059204.8E-18145184IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
EHAFGLTPAD RQELQMKKAK LVAMLDEVDR RYRQYYHQMH IVVSSFEAAA GFGAAKTYTS  60
LALKTISRHF RSLRDAIAGQ IRLTSKNLGE EDLTGSGKGE TSRLHFVDQQ LRQQRALQQL  120
GMIQQHAWRP QRGLPERAVS ILRAWLFEHF LHPYPKDADK HLLARQTGLT RSQVSNWFIN  180
ARVRLWKPMV EEMYMEELRE ADTQNRAADS KVTTESGQNN EETVSKEGPG NSENGQEEKS  240
KKNRTLNNSI EEGGYMQQNG GFKPDQASDR INGRNQTTGM TGVSDSHVFH EIDNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-17134192563Homeobox protein Meis2
3k2a_B6e-17134192563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.37670.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027982.21e-113PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_007027983.21e-113PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017977082.11e-113PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017977083.11e-113PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017977084.11e-113PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SIW12e-97BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A0C9RM181e-139A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
STRINGEOY084861e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.12e-82BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]